:orphan:

Demo scripts
============



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    <div class="sphx-glr-thumbnails">


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Kinematics Inference
--------------------



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    <div class="sphx-glr-thumbnails">


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    <div class="sphx-glr-thumbcontainer" tooltip="The code below samples from a Discrete Wiener Process Acceleration (DWPA) model.">

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  .. image:: /auto_examples/kinematics/images/thumb/sphx_glr_plotSimulatedTrajectoryDWPA_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_kinematics_plotSimulatedTrajectoryDWPA.py`

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      <div class="sphx-glr-thumbnail-title">Sampling from a Discrete Wiener Process Acceleration Model</div>
    </div>


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    <div class="sphx-glr-thumbcontainer" tooltip="The code below performs online Kalman filtering of a trajectory of the mouse shown on the left ...">

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  .. image:: /auto_examples/kinematics/images/thumb/sphx_glr_plotOnlineFilterFWGMouseTrajectory_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_kinematics_plotOnlineFilterFWGMouseTrajectory.py`

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      <div class="sphx-glr-thumbnail-title">Online filtering of a foraging mouse trajectory</div>
    </div>


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    <div class="sphx-glr-thumbcontainer" tooltip="The code below performs online Kalman filtering of a simulated mouse trajectory.">

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  .. image:: /auto_examples/kinematics/images/thumb/sphx_glr_plotBatchFilterSimulatedTrajectoryDWPA_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_kinematics_plotBatchFilterSimulatedTrajectoryDWPA.py`

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      <div class="sphx-glr-thumbnail-title">Offline filtering of a simulated mouse trajectory</div>
    </div>


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    <div class="sphx-glr-thumbcontainer" tooltip="The code below performs online Kalman smoothing of a simulated mouse trajectory.">

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  .. image:: /auto_examples/kinematics/images/thumb/sphx_glr_plotBatchSmoothSimulatedTrajectoryDWPA_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_kinematics_plotBatchSmoothSimulatedTrajectoryDWPA.py`

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      <div class="sphx-glr-thumbnail-title">Offline smoothing of a simulated mouse trajectory</div>
    </div>


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    <div class="sphx-glr-thumbcontainer" tooltip="The code below compares the expectation maximization (EM) and gradient ascent algorithm for tra...">

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  .. image:: /auto_examples/kinematics/images/thumb/sphx_glr_plotEMvsGAcomparisonSimulated_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_kinematics_plotEMvsGAcomparisonSimulated.py`

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      <div class="sphx-glr-thumbnail-title">Comparison between EM and gradient ascent for tracking a simulated mouse</div>
    </div>


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    <div class="sphx-glr-thumbcontainer" tooltip="The code below compares the expectation maximization (EM) and gradient ascent algorithm for tra...">

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  .. image:: /auto_examples/kinematics/images/thumb/sphx_glr_plotEMvsGAcomparisonForagingMouse_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_kinematics_plotEMvsGAcomparisonForagingMouse.py`

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      <div class="sphx-glr-thumbnail-title">Comparison between EM and gradient ascent for tracking a foraging mouse</div>
    </div>


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    <div class="sphx-glr-thumbcontainer" tooltip="The code below performs Kalman filtering and smoothing of a trajectory of the mouse shown on th...">

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  .. image:: /auto_examples/kinematics/images/thumb/sphx_glr_plotFilterFWGMouseTrajectoryManualVsLearnedParams_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_kinematics_plotFilterFWGMouseTrajectoryManualVsLearnedParams.py`

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      <div class="sphx-glr-thumbnail-title">Filtering of a foraging mouse trajectory with manual vs learned parameters</div>
    </div>


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    </div>

Learning and Inference for Neural Latents
-----------------------------------------



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    <div class="sphx-glr-thumbnails">


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    <div class="sphx-glr-thumbcontainer" tooltip="The code below learns and infers latents with simple simulated data.">

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  .. image:: /auto_examples/neuralLatents/images/thumb/sphx_glr_plot_simulations_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_neuralLatents_plot_simulations.py`

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      <div class="sphx-glr-thumbnail-title">Learning and inference of latents with simple simulated data</div>
    </div>


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    <div class="sphx-glr-thumbcontainer" tooltip="The code below learns and infers latents with MC_MAZE_SMALL data.">

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  .. image:: /auto_examples/neuralLatents/images/thumb/sphx_glr_plot_MC_MAZE_SMALL_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_neuralLatents_plot_MC_MAZE_SMALL.py`

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      <div class="sphx-glr-thumbnail-title">Learning and inference of latents with MC_MAZE_SMALL data</div>
    </div>


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    </div>

Online Bayesian linear regression
---------------------------------



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    <div class="sphx-glr-thumbnails">


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    <div class="sphx-glr-thumbcontainer" tooltip="The code below uses an online algorithm to estimate the linear receptive field of a simple cell...">

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  .. image:: /auto_examples/onlineBayesianLinearRegression/images/thumb/sphx_glr_plotOnlineBayesianLinearRegressionSimpleCell_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_onlineBayesianLinearRegression_plotOnlineBayesianLinearRegressionSimpleCell.py`

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      <div class="sphx-glr-thumbnail-title">Anesthetized cat V1 simple cell</div>
    </div>


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    <div class="sphx-glr-thumbcontainer" tooltip="The code below uses an online algorithm to estimate the posterior of the weighs of a linear reg...">

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  .. image:: /auto_examples/onlineBayesianLinearRegression/images/thumb/sphx_glr_plotOnlineBayesianLinearRegressionSimulatedData_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_onlineBayesianLinearRegression_plotOnlineBayesianLinearRegressionSimulatedData.py`

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      <div class="sphx-glr-thumbnail-title">Simulated data</div>
    </div>


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    </div>


.. toctree::
   :hidden:
   :includehidden:


   /auto_examples/kinematics/index.rst
   /auto_examples/neuralLatents/index.rst
   /auto_examples/onlineBayesianLinearRegression/index.rst


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  .. container:: sphx-glr-footer sphx-glr-footer-gallery

    .. container:: sphx-glr-download sphx-glr-download-python

      :download:`Download all examples in Python source code: auto_examples_python.zip </auto_examples/auto_examples_python.zip>`

    .. container:: sphx-glr-download sphx-glr-download-jupyter

      :download:`Download all examples in Jupyter notebooks: auto_examples_jupyter.zip </auto_examples/auto_examples_jupyter.zip>`


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 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_